species:   Fugra
pid:       PID0748
parent:    Fg-JS-milR53
paralog:   
locus:     CM000577.1:4525462-4525606
matures:   ['GAGACAGAGGAAGA', 'UCCUGCGACCUG']
srr:       SRR2970501_1
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.AACM00000000.2_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram CM000577.1:4525462-4525606

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

                      **************                                                                        ****************                     
UUGAGGGAUUGACGUGUACGUCCCUCCUGCGACCUGGACCUAGCAAUGCGAAGGAACUCUACACUAAGACUGAGUGGGAAGUCGACAUUGCAAGCGCAAUAGCAGGUGUAGAGACAGAGGAAGAGGAUACAGAGUCUGACCUGGA
((.(((....(((.(((..(((((((((..(.((((.((((.(((((((((....((((............))))......))).))))))..((......)))))).))).).)..))).)).)))))))..)))...))).))
--------------------------------------------------------------------------------------------------------------GAGACAGAGGAAGA--------------------- l=14 a=0 c
------------------------UCCUGCGACCUG------------------------------------------------------------------------------------------------------------- l=12 a=0 c*
----------------------------------------------------------------UAAGACUGAGUGGGAAGUCGA------------------------------------------------------------ l=21 a=1 ma
------------------------UCCUGCGACCUG------------------------------------------------------------------------------------------------------------- l=12 a=0 ma*

----------------------------------------------------------------UAAGACUGAGUGGGAAGUCGA------------------------------------------------------------ l=21 a=1 (ma)

mb-00010
ax-1011111
ku-01
ss-110111111110
fn-011
